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PTPN11
Available structures
PDBOrtholog search:
List of PDB id codes

2SHP, 3B7O, 3MOW, 3O5X, 3TKZ, 3TL0, 4DGP, 4DGX, 4GWF, 4H1O, 4JE4, 4JEG, 3ZM0, 3ZM1, 3ZM2, 3ZM3, 4H34, 4JMG, 4NWF, 4NWG, 4OHD, 4OHE, 4OHH, 4OHI, 4OHL, 4PVG, 4RDD, 4QSY, 5DF6, 5IBS, 5EHP, 5EHR, 5I6V, 5IBM

Identifiers
AliasesPTPN11, BPTP3, CFC, JMML, METCDS, NS1, PTP-1D, PTP2C, SH-PTP2, SH-PTP3, SHP2, protein tyrosine phosphatase, non-receptor type 11, protein tyrosine phosphatase non-receptor type 11
External IDs
Gene location (Human)
Chr.Chromosome 12 (human)[1]
Band12q24.13Start112,418,351 bp[1]
End112,509,913 bp[1]
Gene location (Mouse)
Chr.Chromosome 5 (mouse)[2]
Band5 5 FStart121,130,533 bp[2]
End121,191,397 bp[2]
RNA expression pattern
More reference expression data
Gene ontology
Molecular functionphospholipase binding
phosphoprotein phosphatase activity
insulin receptor binding
phosphatase activity
receptor tyrosine kinase binding
peptide hormone receptor binding
protein binding
non-membrane spanning protein tyrosine phosphatase activity
hydrolase activity
SH3/SH2 adaptor activity
phosphatidylinositol-4,5-bisphosphate 3-kinase activity
1-phosphatidylinositol-3-kinase activity
cell adhesion molecule binding
protein tyrosine phosphatase activity
phosphotyrosine residue binding
protein domain specific binding
D1 dopamine receptor binding
insulin receptor substrate binding
protein tyrosine kinase binding
protein kinase binding
Cellular componentcytoplasm
cytosol
mitochondrion
cell nucleus
nucleoplasm
macromolecular complex
Biological processdephosphorylation
megakaryocyte development
positive regulation of signal transduction
negative regulation of insulin secretion
regulation of cell adhesion mediated by integrin
atrioventricular canal development
intestinal epithelial cell migration
organ growth
epidermal growth factor receptor signaling pathway
negative regulation of growth hormone secretion
axonogenesis
glucose homeostasis
regulation of protein export from nucleus
multicellular organism growth
regulation of multicellular organism growth
lipid metabolism
ephrin receptor signaling pathway
abortive mitotic cell cycle
DNA damage checkpoint
protein dephosphorylation
T cell costimulation
platelet formation
microvillus organization
positive regulation of mitotic cell cycle
positive regulation of glucose import in response to insulin stimulus
genitalia development
platelet activation
fibroblast growth factor receptor signaling pathway
heart development
brain development
regulation of type I interferon-mediated signaling pathway
activation of MAPK activity
hormone-mediated signaling pathway
integrin-mediated signaling pathway
Bergmann glial cell differentiation
homeostasis of number of cells within a tissue
inner ear development
platelet-derived growth factor receptor signaling pathway
negative regulation of cortisol secretion
peptidyl-tyrosine dephosphorylation
ERBB signaling pathway
negative regulation of hormone secretion
triglyceride metabolic process
hormone metabolic process
positive regulation of hormone secretion
negative regulation of cell adhesion mediated by integrin
regulation of protein complex assembly
face morphogenesis
cerebellar cortex formation
leukocyte migration
multicellular organismal reproductive process
phosphatidylinositol phosphorylation
neurotrophin TRK receptor signaling pathway
phosphatidylinositol-3-phosphate biosynthetic process
axon guidance
positive regulation of ERK1 and ERK2 cascade
cellular response to epidermal growth factor stimulus
positive regulation of protein kinase B signaling
cytokine-mediated signaling pathway
interleukin-6-mediated signaling pathway
cellular response to cytokine stimulus
cellular response to mechanical stimulus
positive regulation of interferon-beta production
positive regulation of interleukin-6 production
positive regulation of tumor necrosis factor production
positive regulation of glucose import
positive regulation of insulin receptor signaling pathway
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_002834
NM_080601
NM_001330437

NM_001109992
NM_011202

RefSeq (protein)

NP_001317366
NP_002825
NP_542168

NP_001103462
NP_035332

Location (UCSC)Chr 12: 112.42 – 112.51 MbChr 5: 121.13 – 121.19 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Tyrosine-protein phosphatase non-receptor type 11 (PTPN11) also known as protein-tyrosine phosphatase 1D (PTP-1D), Src homology region 2 domain-containing phosphatase-2 (SHP-2), or protein-tyrosine phosphatase 2C (PTP-2C) is an enzyme that in humans is encoded by the PTPN11gene. PTPN11 is a protein tyrosine phosphatase (PTP) Shp2.[5][6]

PTPN11 is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains two tandem Src homology-2 domains, which function as phospho-tyrosine binding domains and mediate the interaction of this PTP with its substrates. This PTP is widely expressed in most tissues and plays a regulatory role in various cell signaling events that are important for a diversity of cell functions, such as mitogenic activation, metabolic control, transcription regulation, and cell migration. Mutations in this gene are a cause of Noonan syndrome as well as acute myeloid leukemia.[7]

  • 2Genetic diseases associated with PTPN11
  • 4Interactions

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Structure and function[edit]

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This phosphatase, along with its paralogue, Shp1, possesses a domain structure that consists of two tandem SH2 domains in its N-terminus followed by a protein tyrosine phosphatase (PTP) domain. In the inactive state, the N-terminal SH2 domain binds the PTP domain and blocks access of potential substrates to the active site. Thus, Shp2 is auto-inhibited.

Upon binding to target phospho-tyrosyl residues, the N-terminal SH2 domain is released from the PTP domain, catalytically activating the enzyme by relieving this auto-inhibition.

Genetic diseases associated with PTPN11[edit]

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Missense mutations in the PTPN11 locus are associated with both Noonan syndrome and Leopard syndrome.

It has also been associated with Metachondromatosis.[8]

Noonan syndrome[edit]

In the case of Noonan syndrome, mutations are broadly distributed throughout the coding region of the gene but all appear to result in hyper-activated, or unregulated mutant forms of the protein. Most of these mutations disrupt the binding interface between the N-SH2 domain and catalytic core necessary for the enzyme to maintain its auto-inhibited conformation.[9]

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Leopard syndrome[edit]

The mutations that cause Leopard syndrome are restricted regions affecting the catalytic core of the enzyme producing catalytically impaired Shp2 variants.[10] It is currently unclear how mutations that give rise to mutant variants of Shp2 with biochemically opposite characteristics result in similar human genetic syndromes.

Cancer associated with PTPN11[edit]

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Patients with a subset of Noonan syndrome PTPN11 mutations also have a higher prevalence of juvenile myelomonocytic leukemias (JMML). Activating Shp2 mutations have also been detected in neuroblastoma, melanoma, acute myeloid leukemia, breast cancer, lung cancer, colorectal cancer.[11] Recently, a relatively high prevalence of PTPN11 mutations (24%) were detected by next-generation sequencing in a cohort of NPM1-mutated acute myeloid leukemia patients,[12] although the prognostic significance of such associations has not been clarified. These data suggests that Shp2 may be a proto-oncogene. However, it has been reported that PTPN11/Shp2 can act as either tumor promoter or suppressor.[13] In aged mouse model, hepatocyte-specific deletion of PTPN11/Shp2 promotes inflammatory signaling through the STAT3 pathway and hepatic inflammation/necrosis, resulting in regenerative hyperplasia and spontaneous development of tumors. Decreased PTPN11/Shp2 expression was detected in a subfraction of human hepatocellular carcinoma (HCC) specimens.[13] The bacterium Helicobacter pylori has been associated with gastric cancer, and this is thought to be mediated in part by the interaction of its virulence factor CagA with SHP2.[14]Hp ipaq 110 user manual.

Interactions[edit]

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PTPN11 has been shown to interact with

  • CagA,[14]
  • Cbl gene,[15]
  • CD117,[16][17]
  • CD31,[18][19][20][21]
  • CEACAM1,[22]
  • Epidermal growth factor receptor,[23][24]
  • Erk[25][26]
  • FRS2,[27][28][29]
  • GAB1,[30][31]
  • GAB2,[32][33][34][35]
  • GAB3,[36]
  • Glycoprotein 130,[37][38][39]
  • Grb2,[29][40][41][42][43][44][45][46][47]
  • Growth hormone receptor,[48][49]
  • HoxA10,[50]
  • Insulin receptor,[51][52]
  • Insulin-like growth factor 1 receptor,[53][54]
  • IRS1,[55][56]
  • Janus kinase 1,[37][40]
  • Janus kinase 2,[40][57][58]
  • LAIR1,[59][60]
  • LRP1,[61]
  • PDGFRB,[62][63]
  • PI3K → Akt[25]
  • PLCG2,[32]
  • PTK2B,[64]
  • Ras[25][26]
  • SLAMF1,[65][66]
  • SOCS3,[37]
  • SOS1,[29][67]
  • STAT3,[13]
  • STAT5A,[68][69] and
  • STAT5B.[68]

H Pylori CagA virulence factor[edit]

CagA is a protein and virulence factor inserted by Helicobacter pylori into gastric epithelia. Once activated by SRC phosphorylation, CagA binds to SHP2, allosterically activating it. This leads to morphological changes, abnormal mitogenic signals and sustained activity can result in apoptosis of the host cell. Epidemiological studies have shown roles of cagA- positive H. pylori in the development of atrophic gastritis, peptic ulcer disease and gastric carcinoma.[70]

References[edit]

  1. ^ abcGRCh38: Ensembl release 89: ENSG00000179295 - Ensembl, May 2017
  2. ^ abcGRCm38: Ensembl release 89: ENSMUSG00000043733 - Ensembl, May 2017
  3. ^'Human PubMed Reference:'. National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^'Mouse PubMed Reference:'. National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Jamieson CR, van der Burgt I, Brady AF, van Reen M, Elsawi MM, Hol F, Jeffery S, Patton MA, Mariman E (December 1994). 'Mapping a gene for Noonan syndrome to the long arm of chromosome 12'. Nat. Genet. 8 (4): 357–60. doi:10.1038/ng1294-357. PMID7894486.
  6. ^Freeman RM, Plutzky J, Neel BG (December 1992). 'Identification of a human Src homology 2-containing protein-tyrosine-phosphatase: a putative homolog of Drosophila corkscrew'. Proc. Natl. Acad. Sci. U.S.A. 89 (23): 11239–43. doi:10.1073/pnas.89.23.11239. PMC50525. PMID1280823.
  7. ^'Entrez Gene: PTPN11 protein tyrosine phosphatase, non-receptor type 11 (Noonan syndrome 1)'.
  8. ^Sobreira NL, Cirulli ET, Avramopoulos D, Wohler E, Oswald GL, Stevens EL, Ge D, Shianna KV, Smith JP, Maia JM, Gumbs CE, Pevsner J, Thomas G, Valle D, Hoover-Fong JE, Goldstein DB (June 2010). 'Whole-genome sequencing of a single proband together with linkage analysis identifies a Mendelian disease gene'. PLoS Genet. 6 (6): e1000991. doi:10.1371/journal.pgen.1000991. PMC2887469. PMID20577567.
  9. ^Roberts AE, Araki T, Swanson KD, Montgomery KT, Schiripo TA, Joshi VA, Li L, Yassin Y, Tamburino AM, Neel BG, Kucherlapati RS (January 2007). 'Germline gain-of-function mutations in SOS1 cause Noonan syndrome'. Nat. Genet. 39 (1): 70–4. doi:10.1038/ng1926. PMID17143285.
  10. ^Kontaridis MI, Swanson KD, David FS, Barford D, Neel BG (March 2006). 'PTPN11 (Shp2) mutations in LEOPARD syndrome have dominant negative, not activating, effects'. J. Biol. Chem. 281 (10): 6785–92. doi:10.1074/jbc.M513068200. PMID16377799.
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  35. ^Crouin C, Arnaud M, Gesbert F, Camonis J, Bertoglio J (April 2001). 'A yeast two-hybrid study of human p97/Gab2 interactions with its SH2 domain-containing binding partners'. FEBS Lett. 495 (3): 148–53. doi:10.1016/S0014-5793(01)02373-0. PMID11334882.
  36. ^Wolf, I.; Jenkins, B. J.; Liu, Y.; Seiffert, M.; Custodio, J. M.; Young, P.; Rohrschneider, L. R. (2002). 'Gab3, a New DOS/Gab Family Member, Facilitates Macrophage Differentiation'. Molecular and Cellular Biology. 22 (1): 231–244. doi:10.1128/MCB.22.1.231-244.2002. ISSN0270-7306. and associates transiently with the SH2 domain-containing proteins p85 and SHP2
  37. ^ abcLehmann U, Schmitz J, Weissenbach M, Sobota RM, Hortner M, Friederichs K, Behrmann I, Tsiaris W, Sasaki A, Schneider-Mergener J, Yoshimura A, Neel BG, Heinrich PC, Schaper F (January 2003). 'SHP2 and SOCS3 contribute to Tyr-759-dependent attenuation of interleukin-6 signaling through gp130'. J. Biol. Chem. 278 (1): 661–71. doi:10.1074/jbc.M210552200. PMID12403768.
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  49. ^Moutoussamy S, Renaudie F, Lago F, Kelly PA, Finidori J (June 1998). 'Grb10 identified as a potential regulator of growth hormone (GH) signaling by cloning of GH receptor target proteins'. J. Biol. Chem. 273 (26): 15906–12. doi:10.1074/jbc.273.26.15906. PMID9632636.
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Oracle Spatial Shp2sdo

Further reading[edit]

Shp2sdo.exe Oracle 11g Download

  • Marron MB, Hughes DP, McCarthy MJ, Beaumont ER, Brindle NP (2000). Tie-1 receptor tyrosine kinase endodomain interaction with SHP2: potential signalling mechanisms and roles in angiogenesis. Adv. Exp. Med. Biol. Advances in Experimental Medicine and Biology. 476. pp. 35–46. doi:10.1007/978-1-4615-4221-6_3. ISBN978-1-4613-6895-3. PMID10949653.
  • Carter-Su C, Rui L, Stofega MR (2000). 'SH2-B and SIRP: JAK2 binding proteins that modulate the actions of growth hormone'. Recent Prog. Horm. Res. 55: 293–311. PMID11036942.
  • Ion A, Tartaglia M, Song X, Kalidas K, van der Burgt I, Shaw AC, Ming JE, Zampino G, Zackai EH, Dean JC, Somer M, Parenti G, Crosby AH, Patton MA, Gelb BD, Jeffery S (2002). 'Absence of PTPN11 mutations in 28 cases of cardiofaciocutaneous (CFC) syndrome'. Hum. Genet. 111 (4–5): 421–7. doi:10.1007/s00439-002-0803-6. PMID12384786.
  • Hugues L, Cavé H, Philippe N, Pereira S, Fenaux P, Preudhomme C (2006). 'Mutations of PTPN11 are rare in adult myeloid malignancies'. Haematologica. 90 (6): 853–4. PMID15951301.
  • Tartaglia M, Gelb BD (2005). 'Germ-line and somatic PTPN11 mutations in human disease'. European Journal of Medical Genetics. 48 (2): 81–96. doi:10.1016/j.ejmg.2005.03.001. PMID16053901.
  • Ogata T, Yoshida R (2006). 'PTPN11 mutations and genotype-phenotype correlations in Noonan and LEOPARD syndromes'. Pediatric Endocrinology Reviews : PER. 2 (4): 669–74. PMID16208280.
  • Feng GS (2007). 'Shp2-mediated molecular signaling in control of embryonic stem cell self-renewal and differentiation'. Cell Res. 17 (1): 37–41. doi:10.1038/sj.cr.7310140. PMID17211446.
  • Edouard T, Montagner A, Dance M, Conte F, Yart A, Parfait B, Tauber M, Salles JP, Raynal P (2007). 'How do Shp2 mutations that oppositely influence its biochemical activity result in syndromes with overlapping symptoms?'. Cell. Mol. Life Sci. 64 (13): 1585–90. doi:10.1007/s00018-007-6509-0. PMID17453145.

External links[edit]

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